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BCCDC-PHL Auto Illumina Run QC Check
==========================================================

.. toctree::
   :maxdepth: 2
   :caption: Contents:



Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

auto_illumina_run_qc_check.core
==========
This module includes the core functionality for performing QC checks on an illumina sequencing run.

.. automodule:: auto_illumina_run_qc_check.core
   :members:

auto_illumina_run_qc_check.parsers
============
This module includes functions for parsing the interop summary and RunParameters.xml files

.. automodule:: auto_illumina_run_qc_check.parsers
   :members:

auto_illumina_run_qc_check.config
=============
This module includes functions for loading the application config file.
      
.. automodule:: auto_illumina_run_qc_check.parsers
   :members: