BCCDC-PHL auto-ncov
==========================================================

.. toctree::
   :maxdepth: 2
   :caption: Contents:



Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

auto_ncov.core
==========
This module includes the core functionality for finding input datasets and running analyses.

.. automodule:: auto_ncov.core
   :members:

auto_ncov.config
============
This module defines the entities to be stored in the database, and their
relationships with one another.

.. automodule:: auto_ncov.config
   :members:

auto_ncov.metadata
==================
This module includes methods used to collect metadata necessary for running ncov-tools.
      
.. automodule:: auto_ncov.metadata
   :members: